Pharmacies

Accounting & Advisory Services for Pharmacies

From POS to PBM, we understand the language of pharmacy operations, and we turn financial data into strategic direction.

Pharmacy-Specific Bookkeeping & Reconciliations

Accurately track revenue, reimbursements, inventory, and cost of goods sold across prescription and OTC lines.

Multi-Store Consolidation & Reporting

Consolidate financials across locations and entities while tracking performance by store, service line, or provider.

Payroll & HR Support

Manage licensed professionals, hourly retail staff, and benefits with compliance-focused payroll and onboarding.

Tax Strategy & Entity Structuring

Minimize tax exposure through proactive planning—including depreciation on equipment, leasehold improvements, and pass-through optimization.

KPI & Operational Dashboards

Monitor cash flow, script volume, gross margin, labor ratios, and shrink with dashboards designed for pharmacy metrics.

Audit & Regulatory Readiness

Prepare for DEA, PBM, and third-party audits with organized financials, reconciliations, and support documentation.

Fractional CFO Services

Partner with an outsourced CFO to evaluate performance, forecast growth, manage vendor risk, and support acquisitions or exit planning.

Financial Solutions for Pharmacy Owners

Running a successful pharmacy requires more than accurate prescriptions. You face tight reimbursement margins, complex inventory systems, multi-state compliance, and evolving payer regulations—all while delivering quality patient care.

At Berndt CPA, we provide specialized accounting, tax, and advisory services for independent and multi-location pharmacies. Whether you’re a single-location pharmacy, a growing franchise, or a hybrid retail-healthcare business, we help you gain control of your numbers and chart a course toward profitability and sustainability. Services include:

Industry-Focused Knowledge – We understand DIR fees, payer mix, front-end sales vs. script volume, and healthcare compliance.
Integrated Systems Expertise – We support QuickBooks Online, pharmacy management systems (PMS), POS platforms, and payroll integrations.
Audit & Lender Readiness – Maintain audit-ready records for PBMs, tax authorities, banks, or buyers.
Strategic Insight – Move from reactive bookkeeping to forward-looking business planning.

Who We Serve

Grow with Confidence, Operate with Clarity

Whether you’re scaling your locations, navigating PBM pressures, or preparing for succession—Berndt CPA brings healthcare-specific accounting and strategic support to help you thrive.

Schedule a Pharmacy Strategy Call to learn how Berndt CPA can help your business increase margins, reduce stress, and plan for what’s next.